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  "Package": "abdiv",
  "Title": "Alpha and Beta Diversity Measures",
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  "Description": "A collection of measures for measuring ecological\ndiversity. Ecological diversity comes in two flavors: alpha\ndiversity measures the diversity within a single site or\nsample, and beta diversity measures the diversity across two\nsites or samples. This package overlaps considerably with other\nR packages such as 'vegan', 'gUniFrac', 'betapart', and\n'fossil'. We also include a wide range of functions that are\nimplemented in software outside the R ecosystem, such as\n'scipy', 'Mothur', and 'scikit-bio'.  The implementations here\nare designed to be basic and clear to the reader.",
  "URL": "https://github.com/kylebittinger/abdiv",
  "BugReports": "https://github.com/kylebittinger/abdiv/issues",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
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    "cosine_distance",
    "cy_dissimilarity",
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    "euclidean",
    "faith_pd",
    "generalized_unifrac",
    "geodesic_metric",
    "hamming",
    "heip_e",
    "hellinger",
    "horn_morisita",
    "information_unifrac",
    "invsimpson",
    "jaccard",
    "jaccard_nestedness",
    "jaccard_turnover",
    "kempton_taylor_q",
    "kulczynski_first",
    "kulczynski_second",
    "kullback_leibler_divergence",
    "manhattan",
    "margalef",
    "match_to_tree",
    "mcintosh_d",
    "mcintosh_e",
    "mean_character_difference",
    "menhinick",
    "minkowski",
    "modified_mean_character_difference",
    "morisita",
    "phylogenetic_alpha_diversities",
    "phylogenetic_beta_diversities",
    "phylosor",
    "phylosor_nestedness",
    "phylosor_turnover",
    "pielou_e",
    "richness",
    "rms_distance",
    "rogers_tanimoto",
    "russel_rao",
    "ruzicka",
    "ruzicka_balanced",
    "ruzicka_gradient",
    "shannon",
    "simpson",
    "simpson_e",
    "sokal_michener",
    "sokal_sneath",
    "sorenson",
    "sorenson_nestedness",
    "sorenson_turnover",
    "strong",
    "unweighted_unifrac",
    "unweighted_unifrac_nestedness",
    "unweighted_unifrac_turnover",
    "variance_adjusted_unifrac",
    "weighted_kulczynski_second",
    "weighted_normalized_unifrac",
    "weighted_unifrac",
    "yule_dissimilarity"
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      "name": "faith_tree",
      "title": "Example data for Faith's phylogenetic diversity",
      "object": "faith_tree",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "leprieur_tree",
      "title": "Example data for phylogenetic nestedness and turnover components",
      "object": "leprieur_tree",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "lozupone_panel_a",
      "title": "Example data for UniFrac distance",
      "object": "lozupone_panel_a",
      "class": [
        "data.frame"
      ],
      "fields": [
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        "SampleID",
        "Counts"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "lozupone_panel_b",
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      "object": "lozupone_panel_b",
      "class": [
        "data.frame"
      ],
      "fields": [
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        "SampleID",
        "Counts"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "lozupone_tree",
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      "object": "lozupone_tree",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
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      "page": "abundance_jaccard",
      "title": "Chao's abundance-weighted indices",
      "topics": [
        "abundance_jaccard",
        "abundance_sorenson"
      ]
    },
    {
      "page": "berger_parker_d",
      "title": "Berger-Parker dominance",
      "topics": [
        "berger_parker_d"
      ]
    },
    {
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      "title": "Binomial deviance and CY index of dissimilarity",
      "topics": [
        "binomial_deviance",
        "cy_dissimilarity"
      ]
    },
    {
      "page": "bray_curtis",
      "title": "Bray-Curtis distance",
      "topics": [
        "bray_curtis"
      ]
    },
    {
      "page": "bray_curtis_components",
      "title": "Balanced variation and abundance gradient components for abundance data",
      "topics": [
        "bray_curtis_balanced",
        "bray_curtis_components",
        "bray_curtis_gradient",
        "ruzicka_balanced",
        "ruzicka_gradient"
      ]
    },
    {
      "page": "canberra",
      "title": "Canberra and related distances",
      "topics": [
        "canberra",
        "clark_coefficient_of_divergence"
      ]
    },
    {
      "page": "chebyshev",
      "title": "Chebyshev distance",
      "topics": [
        "chebyshev"
      ]
    },
    {
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      "title": "Correlation and cosine distance",
      "topics": [
        "correlation_distance",
        "cosine_distance"
      ]
    },
    {
      "page": "diversity_measures",
      "title": "Diversity measures implemented",
      "topics": [
        "alpha_diversities",
        "beta_diversities",
        "diversity_measures",
        "phylogenetic_alpha_diversities",
        "phylogenetic_beta_diversities"
      ]
    },
    {
      "page": "euclidean",
      "title": "Euclidean and related distances",
      "topics": [
        "chord",
        "euclidean",
        "geodesic_metric",
        "hellinger",
        "rms_distance"
      ]
    },
    {
      "page": "faith_pd",
      "title": "Faith's phylogenetic diversity",
      "topics": [
        "faith_pd"
      ]
    },
    {
      "page": "faith_tree",
      "title": "Example data for Faith's phylogenetic diversity",
      "topics": [
        "faith_tree"
      ]
    },
    {
      "page": "hamming",
      "title": "Hamming distance",
      "topics": [
        "hamming"
      ]
    },
    {
      "page": "jaccard",
      "title": "Beta diversity for presence/absence data",
      "topics": [
        "jaccard",
        "kulczynski_first",
        "kulczynski_second",
        "rogers_tanimoto",
        "russel_rao",
        "sokal_michener",
        "sokal_sneath",
        "sorenson",
        "yule_dissimilarity"
      ]
    },
    {
      "page": "jaccard_components",
      "title": "Nestedness and turnover components for presence/absence data",
      "topics": [
        "jaccard_components",
        "jaccard_nestedness",
        "jaccard_turnover",
        "sorenson_nestedness",
        "sorenson_turnover"
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    },
    {
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      "title": "Kempton-Taylor Q index",
      "topics": [
        "kempton_taylor_q"
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    },
    {
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      "title": "Kullback-Leibler divergence",
      "topics": [
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      "page": "leprieur_tree",
      "title": "Example data for phylogenetic nestedness and turnover components",
      "topics": [
        "leprieur_tree"
      ]
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    {
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      "topics": [
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        "lozupone_panel_b",
        "lozupone_tree"
      ]
    },
    {
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      "title": "Manhattan and related distances",
      "topics": [
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        "mean_character_difference",
        "modified_mean_character_difference"
      ]
    },
    {
      "page": "margalef",
      "title": "Margalef's richness index",
      "topics": [
        "margalef"
      ]
    },
    {
      "page": "match_to_tree",
      "title": "Match vector of counts to phylogenetic tree",
      "topics": [
        "match_to_tree"
      ]
    },
    {
      "page": "mcintosh_d",
      "title": "McIntosh dominance index D",
      "topics": [
        "mcintosh_d"
      ]
    },
    {
      "page": "mcintosh_e",
      "title": "McIntosh's evenness measure E",
      "topics": [
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    {
      "page": "menhinick",
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      "page": "minkowski",
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      "topics": [
        "minkowski"
      ]
    },
    {
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      "topics": [
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        "morisita"
      ]
    },
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      "title": "Richness or number of observed species",
      "topics": [
        "richness"
      ]
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        "ruzicka"
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      "title": "Shannon diversity and related measures",
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        "heip_e",
        "pielou_e",
        "shannon"
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        "invsimpson",
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        "phylosor",
        "unifrac",
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      "buildurl": "https://github.com/r-universe/kylebittinger/actions/runs/35720886671"
    }
  ]
}