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usedist - Distance Matrix Utilities
Functions to re-arrange, extract, and work with distances.
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7.02 score 15 stars 6 dependents 258 scripts 412 downloadsabdiv - Alpha and Beta Diversity Measures
A collection of measures for measuring ecological diversity. Ecological diversity comes in two flavors: alpha diversity measures the diversity within a single site or sample, and beta diversity measures the diversity across two sites or samples. This package overlaps considerably with other R packages such as 'vegan', 'gUniFrac', 'betapart', and 'fossil'. We also include a wide range of functions that are implemented in software outside the R ecosystem, such as 'scipy', 'Mothur', and 'scikit-bio'. The implementations here are designed to be basic and clear to the reader.
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5.45 score 10 stars 5 dependents 38 scripts 556 downloads